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Best-practice variant calling pipeline for automated sequencing analysis; SciPy 2013 Presentation
BroadE: Calling variants
BroadE: Overview of GATK & best practices
BroadE: Introduction to the GATK & GSA best practices
Instrumenting Human Variant Calling Workflow on Blue Waters
BroadE: Calling variants
BroadE: Analyzing variant calls
SNP Calling Analysis
VC Workflow pt4 SAM to Variants
BroadE: Introduction to data processing and variant detection for next-generation DNA sequencing
Methods in genomic variant calling
SciPy 2013 Lightning Talks, Wed June 26